Given all the information, I'd still recommend consulting an accountant to help and guide how to record these transactions. Your accountant can provide more expert advice in dealing with this concern.
You can also visit the Find-a-ProAdvisor website and look for an accountant or bookkeeper within your area that can help and advise you about accounting matters. All you need to do is click on the envelope icon from their profile to send them a message.
I always categorise my own salary payments as business transactions, then as Owner Withdrawal. That's the closest option in QBSE I can find, and it doesn't mess up any numbers in terms of profit and loss, taxable profits etc.
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