I can help you with populating recurring payments to your QuickBooks Online account, @hhe4300.
Is this an automatic payment for a recurring invoice? If so, payments before 3 pm PT, they should be in your bank account in 2 business days. If you process payments after 3 pm PT, we'll start the deposit the following business day. To learn more about this process, check out this article: Find Out When QuickBooks Payments Deposits Your Money.
If not or you've received the payment outside QuickBooks, you may record the payment manually. Here's a resource to know more about recording invoice payments: Record invoice payments in QuickBooks Online.