You can enable the TDS feature in your QuickBooks account. I can guide you in doing so.
Make sure to enter the customer and the supplier's PAN number and mark on the TDS applicable tick box.
Customer
Supplier
Once completed, while creating the invoice for that customer, you will get option to select TDS section and enter the TDS amount applicable in that invoice. On the other hand, while entering the bill for that supplier, you will get option to automatically calculate TDS based on the selected section.
Also, I've added the following articles to help you manage TDS in QuickBooks: