Unfortunately you are not able to specify whereabouts the VAT would fall in your budget as a different section. Generally; i'd advise to fill in the budget on a VAT Inclusive basis.
This is not something we get asked about regularly, you'll be the first I've had this questioned presented to me specifically. You can suggest adding a section for VAT under the cog-wheel and Feedback, however currently that functionality is not build into the system.
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