In QBO, you’ll have to unlink invoice payments one at a time. This is to avoid the accidental removal of another transaction.
Though, through our Feedback board, we can pass a request here about this feature. Just go to the Gear icon and choose Feedback. These requests and suggestions are forwarded to the Product Development Team. And I want to let you know that your voice matters, and each update our developer team creates are considered that it benefits our customer's business.
For future reference, here’s a link that outlines the complete steps on how to associate a bank deposit to an invoice. Additionally, this guide contains resources to help efficiently manage customer transactions in QBO: Sales and customers.
Also, you can always visit our Help Articles for QuickBooks Online in case you need some tips and related articles for your future tasks.
I appreciate your patience as we work through this. If there's anything else I can do for you, please let me know. I'll be around to help you out. Stay safe!
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