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When a reconciled transaction is edited or deleted in QuickBooks Online, it throws off the beginning balance for your next reconciliation. The fix is to use the Reconcile Discrepancy Report to find what changed, re-enter any missing transactions with the right details, and mark them as reconciled — bringing your discrepancy back to $0 so you can move forward.
Step 1: Open the Reconcile Discrepancy Report
- Go to All apps, then Accounting, then Reconcile.
- Select the bank account you're trying to reconcile from the dropdown.
- If your beginning balance is off, you'll see an alert: "Your account isn't ready to reconcile yet. Your beginning balance is off by..."
- Select We can help you fix it to open the Reconcile Discrepancy Report.
Make a note of the exact dollar amount your balance is off by before you start — the changes you find should add up to that amount.
Step 2: Review what changed
The report lists every transaction that was edited, deleted, or voided since your last reconciliation. For each item:
- Check the What happened column to see whether the transaction was deleted, modified, or voided, and when.
- Select Review in tray for the full details.
- For a complete change history, select the dropdown next to Review in tray, then View History.
Step 3: Re-enter the deleted transactions
Since the original transactions were deleted when you made corrections, you'll need to re-enter them with the right details. Once you've done that, mark each one as reconciled so QuickBooks knows they belong to the 2023 period you already closed:
- Go to All apps, then Accounting, then Chart of accounts.
- Find the bank account and select View register.
- Locate each re-entered transaction.
- Click in the checkmark column until it shows an R (reconciled).
- Select Save.
This brings those transactions back into your completed 2023 reconciliation without reopening the whole period.
Step 4: Confirm the discrepancy is cleared
When you've resolved all the flagged changes, the Total discrepancy difference in the Reconcile Discrepancy Report will show $0.00. Your beginning balance now matches your bank statement, and you're ready to start reconciling January 2024.
Option: Undo the entire reconciliation (accountant access required)
If there are more changes than expected and starting fresh feels easier, your accountant can undo the entire 2023 reconciliation from QuickBooks Online Accountant. This option isn't available in a standard QuickBooks Online account — it requires accountant access to your company file.
Important: undoing a reconciliation permanently deletes any attachments and reports associated with it, so your accountant should download those first.
Once the reconciliation is undone, you'd re-reconcile the account with the correct transactions already in place. Here's how your accountant would do it:
- Open your company file from QuickBooks Online Accountant.
- Go to Accounting, then Reconcile, then History by account.
- Select the account and date range, then find the 2023 reconciliation.
- In the Action column, select the dropdown, then Undo.
- Select Yes, then Undo to confirm.
For a step-by-step walkthrough of either path, these official QuickBooks articles have you covered:
- Fix beginning balance issues when reconciling in QuickBooks Online
- Fix issues at the end of a reconciliation in QuickBooks Online
- Undo a client's entire reconciliation in QuickBooks Online Accountant
If anything looks off after working through these steps, drop a reply with more details and we'll help you track it down.
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