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February 8, 2026
Question

Employee's withholding caused a duplicate line item that needs to be deleted

  • February 8, 2026
  • 1 reply
  • 17 views

I have an employee that for personal reasons only worked a couple hours in a payroll.  The employee withheld the entire paycheck, however employer taxes still applied. QBO created an accounting entry for the employer taxes in Payroll: Taxes as duplicate because the Tax Payment we paid as employer already included that amount.  There is no bank feed and no register entry for the extra employer tax entry and I cannot figure out how to delete/modify it.    

1 reply

QuickBooks Team
February 8, 2026

Hello there, Mich. Let me share some insights about the causes of duplicate employees' withholding in QuickBooks Online Payroll.

 

Please know that QuickBooks prioritizes compliance with tax regulations, which is why system-generated payroll entries are protected and cannot be directly deleted or modified by users. These entries often involve calculations tied to tax filings (e.g., federal, state, and local taxes) and employer obligations such as Social Security, Medicare, and unemployment taxes.

 

Making direct changes or deletions to payroll entries could result in inaccuracies in tax liabilities, payroll reporting, or filings, which could lead to penalties, errors, or non-compliance with statutory laws.

 

With that, we recommend contacting QuickBooks Payroll live support, which can help identify the exact source of the duplication and offer safe ways to correct or reverse automatic entries. 

 

Here's how:

 

  1. Navigate to the Help menu.
  2. Select the Search option and type "contact support."
  3. Click the Contact Us tab at the bottom.
  4. Enter the question, keyword, or topic for which you need assistance.
  5. Follow the prompts, then choose your preferred way to connect with us: Have us call you or chat with us.

 

Please take note of our support hours to view available times and ensure you receive prompt support.

 

I suggest considering our QuickBooks Live Expert Assisted service to enhance your QBO Payroll experience. Our knowledgeable team of experts stands ready to provide immediate support tailored to your employees' and wage concerns.

 

If you have any further questions or need assistance with QuickBooks, feel free to click the Reply button.