If you're using QuickBooks Online Advanced Payroll, you can directly apply the leave to the pay run. If you're using the QuickBooks Online Standard Payroll, I would recommend contacting our Support, so they can guide you to enter the leave portion of the employee's pay. You can reach them using these steps:
Click on Help and choose Contact Us.
Paste your question in the text box and click Let's talk.
Choose between Message an agent or Get a callback. These options are available during the UK business hours.
If you have other questions about payroll, you can always go back to this thread.
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