You'll have to make sure that the payments and refunds are entered based on the correct GST filing period. This way, it'll show you the correct adjustment balance.
That being said, let's go back and review the payments and refunds you've entered to make sure you've chosen the correct filing period and affected accounts.
In addition, I'd also recommend contacting our Customer Care Support so someone can assist properly in recording the GST payments and refunds. To do so: