To send/email two types of invoices in QuickBooks Online (QBO), you need to create a new template for each of them. The steps to do this are pretty quick and easy.
Here's how:
In QBO, go to the Gear icon at the top right to get to the Custom Form Styles.
Click the New style option and pick Invoice in the drop-down.
Adjust the general layout and look of your template in the Design tab.
Start customizing the details in the Content tab, then personalise your email message in the Email tab.