You can unlock and refinalise the pay run if you have not processed any automated super payments to add the career's leave. Here's how to unlock a pay run:
Click on the Payroll tab.
Click on Pay Runs and select the pay run to edit.
Click on Pay Run Actions and choose Unlock.
Enter a Comment about why you're unlocking the pay run and then select Unlock.
Once done, locate the employee's name and click on it to show her Earnings section. Then, click on Actions and add Take Leave. And under Leave taken select the leave category you wanted to pay the employee and enter Units or Hours. And click on Save.
Then, create an updated pay event to update employee's year to date figures. Here's how:
Click on the Payroll tab.
Click on Reports and locate Single Touch Payroll.
Click on Create update event.
Select the Financial year and the Pay schedule then click on Create.
The employee's and their year to date will show in the current page.