The answer to your question about multiple GST is no, ramesh-mahoriove.
QuickBooks Online (QBO) can only support one GST per company or account. You can create multiple QBO account to manage the different tax number for each branch. Please visit our QuickBooks page to see our plan that suits your needs.
One QBO account is for one company file. You can manage branches/divisions by utilizing the Class/Location feature available in QBO Plus. Otherwise you should open a new account.